Migrate skip checks to --EXTENSIONS--, p4

For rationale, see #6787

Extensions migrated in part 4:
* simplexml
* skeleton
* soap
* spl
* sqlite3
* sysvmsg

Migrate skip checks to --EXTENSIONS--, p4

For rationale, see #6787

Extensions migrated in part 4:
* simplexml
* skeleton
* soap
* spl
* sqlite3
* sysvmsg
* sysvsem
* tidy - also removed a check for an ancient dependency version

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Trim trailing whitespaces and fix code style

Closes GH-5554.

Fixed bug #79536 (zend_clear_exception prevent exception's destructor to be called).